Publications
Sánchez-Wandelmer J, Kriegenburg F, Rohringer S, Schuschnig M, Gomez-Sanchez R, Zens B, Abreu S, Hardenberg R, Hollenstein D, Gao J, Ungermann C, Martens S, Kraft C and Reggiori F (2017). Atg4 proteolytic activity can be inhibited by Atg1 phosphorylation . Nature Communications 8: 295. DOI: 10.1038/s41467-017-00302-3
Abreu S, Kriegenburg F, Gomez-Sanchez R, Mari M, Sanchez-Wandelmer J, Rasmussen M, Soares Guimaraes R, Zens B, Schuschnig M, Hardenberg R, Peter M, Johansen T, Kraft C, Martens S and Reggiori F (2017). A conserved LIR motif mediates Atg4 association to autophagosomal membranes and Atg8 deconjugation. EMBO Reports 18: 765-780. DOI: 10.15252/embr.201643146
Torggler R, Papinski D and Kraft C (2017) Assays to Monitor Autophagy in Saccharomyces cerevisiae. Cells 6: 23. DOI:10.3390/cells6030023
Galuzzi L, ..., Kraft C, ..., Kroemer G (2017) Molecular definitions of autophagy and related processes. The EMBO journal 36:1811-1836. DOI: 10.15252/embj.201796697
Fracchiolla D, Sawa-Makarska J, Zens B, de Ruiter A, Brezovich A, Romanov J, Runggatscher K, Kraft C, Zagrovic B and Martens S (2016). Mechanism of cargo-directed Atg8 conjugation during selective autophagy. elife, DOI: 10.7554/eLife.18544
Papinski D, Kraft C (2016) Regulation of autophagy by signalling through the Atg1/ULK1 complex. Journal of Molecular Biology DOI: 10.1016/j.jmb.2016.03.030
Torggler R, Papinski D, Brach T, Bas L, Schuschnig M., Pfaffenwimmer T., Rohringer S, Matzhold T, Schweida D, Brezovich A and Kraft C (2016). Two Independent Pathways within Selective Autophagy Converge to Activate Atg1 Kinase at the Vacuole. Molecular Cell 64: 221-235. DOI:10.1016/j.molcel.2016.09.008
Klionsky DJ, Abdelmohsen K, Abe A, Abedin M, ..., Kraft C, ..., Zughaier S (2016) Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition). Autophagy 8: 445-544. DOI: 10.4161/auto.19496
Müller M, Schmidt O, Angelova M, Faserl K, Kremser L, Pfaffenwimmer T, Kraft C, Trajanoski Z, Lindner H and Teis D (2015). The sequential action of the MVB pathway and autophagy ensures cell survival during starvation. elife 4: e07736. DOI: 10.7554/eLife.07736.
Brezovich A, Schuschnig M, Ammerer G and Kraft C (2015). An in vivo detection system for transient and low abundant protein interactions and their kinetics in budding yeast. Yeast 32: 355-365. DOI:10.1002/yea.3063
Rebsamen M, Pochini L, Stasyk T, Araujo M, Galluccio M, Kandasamy R, Snijder B, Fauster A, Fudashevskaya E, Bruckner M, Scorzoni S, Filipek P, Huber K, Bigenzahn J, Heinz L, Kraft C, Bennett K, Indiveri C, Huber L and Superti-Furga G (2015). SLC is an integral component of the lysosomal amino acid-sensing machinery that controls mTORC1 activity. Nature 519: 477-481. DOI:10.1038/nature14107
Wilson-Zbinden C, Xavier da Silveira dos Santos A, Stoffel-Studer I, van der Vaart A, Hofmann K, Reggiori F, Riezman H, Kraft C and Peter M (2014). A common phosphatidylethanolamine pool is used for autophagy, and for phosphatidylcholine and glycosylphosphatidylinositol anchor synthesis in Saccharomyces cerevisiae. Genetics 2: 475-85. DOI:10.1534/genetics.114.169797.
Pfaffenwimmer T, Reiter W, Brach T, Nogellova V, Papinski D, Schuschnig M, Abert C, Ammerer G, Martens S and Kraft C (2014) The Hrr25 kinase promotes selective autophagy by phosphorylating the cargo-receptor Atg19. EMBO Reports 15: 862-870. DOI: 10.15252/embr.201438932
Papinski D, Kraft C (2014) Atg1 kinase organizes autophagosome formation by phosphorylating Atg9. Autophagy 10: 1338-1340. DOI: 10.4161/auto.28971
Papinski D, Schuschnig M, Reiter W, Wilhelm L, Barnes C, Majolica A, Hansmann I, Pfaffenwimmer T, Kijanska M, Stoffel I, Lee SS, Brezovich A, Lou HJ, Turk BE, Aebersold R, Ammerer G, Peter M and Kraft C (2014) Early steps in autophagy depend on direct phosphorylation of Atg9 by the Atg1 kinase. Molecular Cell 53: 471–483. DOI: 10.1016/j.molcel.2013.12.011
Martens S, Rusten TE, Kraft C (2013) Autophagy at Sea. Autophagy 9: 1286-1291. DOI: 10.4161/auto.25838
Romanov J, Walczak M, Ibiricu I, Schüchner S, Ogris E, Kraft C, Martens S (2012) Mechanism and functions of membrane binding by the Atg5-Atg12/Atg16 complex during autophagosome formation. EMBO journal 31: 4304-17. DOI: 10.1038/emboj.2012.278
Kraft C*, Kijanska M, Kalie E, Siergiejuk E, Lee S, Semplicio G, Stoffel I, Brezovich A, Verma M, Hansmann I, Ammerer G, Hofmann K, Tooze S, Peter M* (2012) Binding of the Atg1/ULK1 kinase to the ubiquitin-like protein Atg8 regulates autophagy. The EMBO journal 31: 3691-703 (* corresponding authors). DOI: 10.1038/emboj.2012.225
Klionsky DJ, Abdalla FC, Abeliovich H, Abraham RT, ..., Kraft C, ..., Zuckerbraun B (2012) Guidelines for the use and interpretation of assays for monitoring autophagy. Autophagy 8: 445-544. DOI: 10.4161/auto.19496
Kraft C*, Martens S* (2012) Mechanisms and regulation of autophagosome formation. Current opinion in cell biology 24: 1-6. DOI: 10.1016/j.ceb.2012.05.001
Cebollero E, Reggiori F, Kraft C (2012) Reticulophagy and ribophagy: regulated degradation of protein production factories. Int J Cell Biol 2012: 182834. DOI: 10.1155/2012/182834
Buschhorn BA, Petzold G, Galova M, Dube P, Kraft C, Herzog F, Stark H, Peters JM (2011) Substrate binding on the APC/C occurs between the coactivator Cdh1 and the processivity factor Doc1. Nature Struct Mol Biol 18: 6-13. DOI: 10.1038/nsmb.1979
Sole C, Nadal-Ribelles M, Kraft C, Peter M, Posas F, de Nadal E (2011) Control of Ubp3 ubiquitin protease activity by the Hog1 SAPK modulates transcription upon osmostress. The EMBO journal 30: 3274-3284. DOI: 10.1038/emboj.2011.227
Kijanska M, Dohnal I, Reiter W, Kaspar S, Stoffel I, Ammerer G, Kraft C*, Peter M* (2010) Activation of Atg1 kinase in autophagy by regulated phosphorylation. Autophagy 6: 1168-1178 (* corresponding authors). DOI: 10.4161/auto.6.8.13849
Bodenmiller B, Wanka S, Kraft C, Urban J, Campbell D, Pedrioli PG, Gerrits B, Picotti P, Lam H, Vitek O, Brusniak MY, Roschitzki B, Zhang C, Shokat KM, Schlapbach R, Colman-Lerner A, Nolan GP, Nesvizhskii AI, Peter M, Loewith R, von Mering C, Aebersold R (2010) Phosphoproteomic analysis reveals interconnected system-wide responses to perturbations of kinases and phosphatases in yeast. Sci Signal 3: rs4. DOI: 10.1126/scisignal.2001182
Kraft C, Peter M, Hofmann K (2010) Selective autophagy: ubiquitin-mediated recognition and beyond. Nature Cell Biol 12: 836-841. DOI: 10.1038/ncb0910-836
Kraft C*, Reggiori F, Peter M* (2009) Selective types of autophagy in yeast. Biochim Biophys Acta 1793: 1404-1412. DOI: 10.1016/j.bbamcr.2009.02.006
Chang M, Luke B, Kraft C, Li Z, Peter M, Lingner J, Rothstein R (2009) Telomerase is essential to alleviate pif1-induced replication stress at telomeres. Genetics 183: 779-791. DOI: 10.1534/genetics.109.107631
Kraft C*, Deplazes A, Sohrmann M, Peter M* (2008) Mature ribosomes are selectively degraded upon starvation by an autophagy pathway requiring the Ubp3p/Bre5p ubiquitin protease. Nature Cell Biol 10: 602-610. DOI: 10.1038/ncb1723
Kraft C*, Peter M* (2008) Is the Rsp5 ubiquitin ligase involved in the regulation of ribophagy? Autophagy 4: 838-840. DOI: doi.org/10.4161/auto.6603
Kraft C, Gmachl M, Peters JM (2006) Methods to measure ubiquitin-dependent proteolysis mediated by the anaphase-promoting complex. Methods 38: 39. DOI: 10.1016/j.ymeth.2005.07.005
Kraft C, Vodermaier HC, Maurer-Stroh S, Eisenhaber F, Peters JM (2005) The WD40 propeller domain of Cdh1 functions as a destruction box receptor for APC/C substrates. Molecular Cell 18: 543-553. DOI: 10.1016/j.molcel.2005.04.023
Wilson CM, Kraft C, Duggan C, Ismail N, Crawshaw SG, High S (2005) Ribophorin I associates with a subset of membrane proteins after their integration at the sec61 translocon. J Biol Chem 280: 4195-4206. DOI: 10.1074/jbc.M410329200
Acquaviva C, Herzog F, Kraft C, Pines J (2004) The anaphase promoting complex/cyclosome is recruited to centromeres by the spindle assembly checkpoint. Nature Cell Biol 6: 892-898. DOI: 10.1038/ncb1167
Sumara I, Gimenez-Abian JF, Gerlich D, Hirota T, Kraft C, de la Torre C, Ellenberg J, Peters JM (2004) Roles of polo-like kinase 1 in the assembly of functional mitotic spindles. Curr Biol 14: 1712-1722. DOI: 10.1016/j.cub.2004.09.049
Mathe E, Kraft C, Giet R, Deak P, Peters JM, Glover DM (2004) The E2-C vihar is required for the correct spatiotemporal proteolysis of cyclin B and itself undergoes cyclical degradation. Curr Biol 14: 1723-1733. DOI: 10.1016/j.cub.2004.09.023
Kraft C, Herzog F, Gieffers C, Mechtler K, Hagting A, Pines J, Peters JM (2003) Mitotic regulation of the human anaphase-promoting complex by phosphorylation. The EMBO journal 22: 6598-6609. DOI: 10.1093/emboj/cdg627
Kraft C (2003) Mitotic entry: tipping the balance. Curr Biol 13: R445-446. DOI: 10.1016/S0960-9822(03)00367-1